|
于瑞蓮, 張偉芳, 胡恭任, 張晨晨, & 王曉明。 (2015)。晉江河口沉積物重金屬污染歷史與來源. 環境科學研究, 28(6) , 907-914。 方紅, 陳秀玲, 張雪琼, 李金嬋, & 楊紅玉。 (2016)。 閩江福州段與城市内河表層沉積物重金屬污染特徵研究。 環境科學學報, 36(4) , 1160-1168。 中國科學院中國動物志編輯委員會。 中國動物志•無脊椎動物(第三十六卷)甲殼動物亞門、十足目、匙指蝦科[M]。 北京: 科學出版社, 2004。 1-12, 74-77。 曲若竹, 侯林, 呂紅麗, & 李海燕。 (2004)。 群體遺傳結構中的基因流。 遺傳, 26(3), 0-382。 宋小晶, 唐文喬, & 張亞。 (2017)。 華東武夷山–仙霞岭地區淡水魚類區系特徵及其動物地理區劃。 生物多樣性, 25(12), 1331-1338。 何美峰。 (2016)。 汀江中上游魚類多樣性及其影響因子。 福建農業學報, 31(6), 566-574。 林鳳武。 (2001)。 木蘭溪水環境現狀及保護對策。 水利科技(2), 18-19。 林謀。 (2015)。 協作視角下福建省九龍江水污染的治理路徑探析。 國際沙棘研究與開發(2015 年 01), 73-75。 洪東奇, 賴淑雅, 黃獻文, 梁佑全, & 歐柏榮。 (2001)。 台灣長鬃山羊個體間粒線體 DNA 之 12S rRNA 及 cytochrome b 序列分析比較。 特有生物研究, 3, 37-48。 陳興偉, 陳文惠, 王林, & 程永隆。 (2009)。 福建省河流枯水逕流的自然地理環境影響研究。 自然資源學報, 24(5), 915-922。 陳守真。 (2005)。 福建省水環境現狀及發展趨勢。 水資源保護, 21(2), 72-75。 陳聿康。(2013)。多齒新米蝦微衛星DNA分子標記之開發與特性分析。碩士論文。海洋生物多樣性及演化研究所。國立東華大學。61頁。 陳叔倬, & 許木柱。 (2001)。 台灣原鄉論的震撼--族群遺傳基因資料的評析。 語言暨語言學, 2(1), 231-235。 徐蘊芹, 葛培皋, & 楊木明。 (1982)。 晉江地區糧油食品污染黄曲霉毒素 B_1 的調查。 福建醫大學報, 2, 006。 張正昇。(2008)。細足米蝦(CaridinagracilipesDeMan,1892)(十足目:匙指蝦科)生殖生態與遺傳多樣性之研究。碩士論文。海洋生物多樣性及演化研究所。國立東華大學。77頁。 梁象秋編著。(2004)。中國動物誌。無脊椎動物。十足目。第三十六卷。第74-132頁。 楊炎。(2010)。中華鋸齒米蝦性腺早期分化及卵黃蛋白發生免疫定位(Master's thesis, 河北大學)。 劉名允。(2006)。沼蝦屬分子系統分類及台灣的粗糙沼蝦親緣地理和族群遺傳探討。博士論文。生命科學系。國立清華大學。73頁。 趙昭炳, 陳佳源。(1993)。福建省地理 [M]。福建: 福建人民出版社。 鄧惠瑜。 (2009)。 台鰍屬親緣地理學研究。 清華大學生命科學系學位論文, 1-104。 韓僑權。 (2010)。 台灣匙指蝦科分子族群遺傳結構及親緣關係之研究。 撰者。 藍昭軍, 李強, 舒琥, 谷平華, 王杭軍, & 吳土金。 (2016)。 基於粒線體細胞色素 b 基因的光倒刺鲃遗遺傳多樣性與遺傳結構研究。 海洋與湖沼, 47(6), 1158-1165。 Avise, J. C. (2000). Phylogeography: the history and formation of species. Harvard University Press, USA.(endnote Baker,RJ,2002) Baker, R., Porter, C., Patton, J., Van Den Bussche, R., Ballard, J., Chemoff, B., & James, A. (2002). Avise JC (2000) Phylogeography: the history and duration of species. Harvard University Press, Cambridge, MA. Avise J. C, Arnold J., Ball RM, Bermingham E., Lamb T., Neigel JE, Reeb CA, Saunders NC (1987) Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual Review of Ecology. I would like to acknowledge my committee members: Robert D. Bradley, Carleton J. Phillips, and David J. Schmidly. I was privileged to have my work assessed by them, my points of view questioned, and my research approaches critically evaluated, providing ample time for exchanges of ideas. Time and interest were always there to, 56, 7. Belle, C. C., & Yeo, D. C. (2010). New observations of the exotic Australian red-claw crayfish, Cherax quadricarinatus (von Martens, 1868)(Crustacea: Decapoda: Parastactidae) in Singapore. Nature in Singapore, 3, 99-102. Bentley, A. I., Schmidt, D. J., & Hughes, J. M. (2010). Extensive intraspecific genetic diversity of a freshwater crayfish in a biodiversity hotspot. Freshwater Biology, 55(9), 1861-1873. Bermingham, E., & Moritz, C. (1998). Comparative phylogeography: concepts and applications. Molecular Ecology, 7(4), 367-369. Bilton, D. T., Freeland, J. R., & Okamura, B. (2001). Dispersal in freshwater invertebrates. Annual review of ecology and systematics, 32(1), 159-181. Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C.-H., Xie, D., . . . Drummond, A. J. (2014). BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS computational biology, 10(4), e1003537. Bouvier, E.-L., 1904a. Crevettes de la famile des Atyidés: espèces qui font partie des collections du Muséum d’Histoire Naturelle.— Bulletin du Muséum d’Histoire naturelle 10: 129-138. Bouvier, E. L., 1925. Recherches sur la morphologie, les variations, la distribution geographique des Crevettes de la famille des Atyides. Encycl. ent., ser. A, 4: 1-370, figs. 1-716. Cai, Y. (1996). A revision of the genus Neocaridina (Crustacea: Decapoda: Atyidae). Acta Zootaxonomica Sinica, 21(2), 129-160. Chen, P.-C., Shih, C.-H., Chu, T.-J., Lee, Y.-C., & Tzeng, T.-D. (2017). Phylogeography and genetic structure of the oriental river prawn Macrobrachium nipponense (Crustacea: Decapoda: Palaemonidae) in East Asia. PloS one, 12(3), e0173490. Chu, K. H., Tong, J., & Chan, T.-Y. (1999). Mitochondrial cytochrome oxidase I sequence divergence in some Chinese species of Charybdis (Crustacea: Decapoda: Portunidae). Biochemical Systematics and Ecology, 27(5), 461-468. Clement, M., Posada, D., & Crandall, K. A. (2000). TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9(10), 1657-1659. Colgan, D., Byrne, M., Rickard, E., & Castro, L. (2005). Limited nucleotide divergence over large spatial scales in the asterinid sea star Patiriella exigua. Marine Biology, 146(2), 263-270. Cook, B., Baker, A., Page, T., Grant, S., Fawcett, J., Hurwood, D., & Hughes, J. (2006). Biogeographic history of an Australian freshwater shrimp, Paratya australiensis (Atyidae): the role life history transition in phylogeographic diversification. Molecular Ecology, 15(4), 1083-1093. Dupanloup, I., S. Schneider and L. Excoffier. 2002. A simulated annealing approach to define the genetic structure of population. Molecular Ecology, 11(12): 71-81. Englund, R. A., & Cai, Y. (1999). The occurrence and description of Neocaridina denticulata sinensis (Kemp, 1918)(Crustacea: Decapoda: Atyidae), a new introduction to the Hawaiian Islands. Bishop Museum Occasional Paper, 58, 58-65. Excoffier, L., & Lischer, H. E. (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular ecology resources, 10(3), 564-567. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39(4), 783-791. Fu, Y.-X. (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147(2), 915-925. Fujita, J., Nakayama, K., Kai, Y., Ueno, M., & Yamashita, Y. (2011). Geographical distributions of mitochondrial DNA lineages reflect ancient directions of river flow: a case study of the Japanese freshwater shrimp Neocaridina denticulata denticulata (Decapoda: Atyidae). Zoological science, 28(10), 712-718. Gifford, M. E., Powell, R., Larson, A., & Gutberlet Jr, R. L. (2004). Population structure and history of a phenotypically variable teiid lizard (Ameiva chrysolaema) from Hispaniola: the influence of a geologically complex island. Molecular Phylogenetics and Evolution, 32(3), 735-748. Grant, W., & Bowen, B. (1998). Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. Journal of heredity, 89(5), 415-426. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Paper presented at the Nucleic acids symposium series. Hamrick, J. (1982). Plant population genetics and evolution. American Journal of Botany, 69(10), 1685-1693. Han, C.-C., Fang, L.-S., Chang, I.-M., & Lin, H.-D. (2018). Genetic variation of the land-locked freshwater shrimp Caridina pseudodenticulata (Decapoda: Atyidae: Caridina) in Taiwan. Mitochondrial DNA Part A, 29(5), 687-694. Hartl, D. L., Clark, A. G., & Clark, A. G. (1997). Principles of population genetics (Vol. 116): Sinauer associates Sunderland. Hedrick, P. W. (1984). Population biology: the evolution and ecology of populations: Jones & Bartlett Pub. Hudson, R. R., Slatkin, M., & Maddison, W. (1992). Estimation of levels of gene flow from DNA sequence data. Genetics, 132(2), 583-589. Hughes, J., Bunn, S., Hurwood, D., Choy, S., & Pearson, R. (1996). Genetic differentiation among populations of Caridina zebra (Decapoda: Atyidae) in tropical rainforest streams, northern Australia. Freshwater Biology, 36(2), 289-296. Hung, M. S., Chan, T. Y., & Yu, H. P. (1993). Atyid shrimps (Decapoda: Caridea) of Taiwan, with descriptions of three new species. Journal of Crustacean Biology, 13(3), 481-503. Hurwood, D., Hughes, J., Bunn, S., & Cleary, C. (2003). Population structure in the freshwater shrimp (Paratya australiensis) inferred from allozymes and mitochondrial DNA. Heredity, 90(1), 64. Hurwood, D. A., & Hughes, J. M. (2001). Nested clade analysis of the freshwater shrimp, Caridina zebra (Decapoda: Atyidae), from north‐eastern Australia. Molecular Ecology, 10(1), 113-125. Jabłońska, A., Mamos, T., Gruszka, P., Szlauer-Łukaszewska, A., & Grabowski, M. (2018). First record and DNA barcodes of the aquarium shrimp, Neocaridina davidi, in Central Europe from thermally polluted River Oder canal, Poland. Knowledge & Management of Aquatic Ecosystems(419), 14. Ju, Y., Hsu, C., Fang, L., Lin, H., Wu, J., Han, C., . . . Chiang, T. (2013). Population structure and demographic history of Sicyopterus japonicus (Perciformes; Gobiidae) in Taiwan inferred from mitochondrial control region sequences. Genetics and Molecular Research, 12(3), 4046-4059. Kano, Y., Nishida, S., & Nakajima, J. (2012). Waterfalls drive parallel evolution in a freshwater goby. Ecology and evolution, 2(8), 1805-1817. Kizaki, K. (1977). Paleogeography of the Ryukyu Islands. Kaiyo Kagaku [Marine Science Monthly], 9, 542-549. Klotz, W., Miesen, F. W., Hüllen, S., & Herder, F. (2013). Two Asian fresh water shrimp species found in a thermally polluted stream system in North Rhine-Westphalia, Germany. Aquatic Invasions, 8(3). Knowlton, N., Weigt, L. A., Solorzano, L. A., Mills, D. K., & Bermingham, E. (1993). Divergence in proteins, mitochondrial DNA, and reproductive compatibility across the Isthmus of Panama. Science, 260(5114), 1629-1632. Kubo, I. (1938). On the Japanese atyid shrimps. J. Imp. Fish. Inst., 33, 67-100. Kumar, S., Tamura, K., & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in bioinformatics, 5(2), 150-163. Lessios, H. A., Kessing, B. D., & Pearse, J. S. (2001). Population structure and speciation in tropical seas: global phylogeography of the sea urchin Diadema. Evolution, 55(5), 955-975. Liang, X. Q. (2002). New Species of Atyid Shrimps (Decapoda, Caridea) From China. Oceanologia et Limnologia Sinica, 33(2), 167-173. Liang, X. (2004). Fauna Sinica. Invertebrata vol. 36. Crustacea Decapoda Atyidae: 1-375: Science Press, Bejing. Liu, J.-X., Gao, T.-X., Zhuang, Z.-M., Jin, X.-S., Yokogawa, K., & Zhang, Y.-P. (2006). Late Pleistocene divergence and subsequent population expansion of two closely related fish species, Japanese anchovy (Engraulis japonicus) and Australian anchovy (Engraulis australis). Molecular Phylogenetics and Evolution, 40(3), 712-723. Mitsugi, M., & Suzuki, H. (2018). Life history of an invasive freshwater shrimp Neocaridina davidi (Bouvier, 1904),(Decapoda: Caridea: Atyidae) in the Tomoe River, the Boso Peninsula, eastern Japan. Crustacean Research, 47, 9-16. Oshima, M. (1957). Studies on the dimorphic salmons, Oncorhynchus masou (Brevoort) and Oncorhynchus rhodurus Jordan and McGregor, found in Japan and adjacent territories. Nireshobou, Sapporo, 79. Page, R. D. M. and E. C. Holmes. 1998. Molecular evolution.Blackwell Science Ltd.,Oxford. Page, T. J., von Rintelen, K., & Hughes, J. M. (2007). Phylogenetic and biogeographic relationships of subterranean and surface genera of Australian Atyidae (Crustacea: Decapoda: Caridea) inferred with mitochondrial DNA. Invertebrate Systematics, 21(2), 137-145. Palumbi, S. R. (1996). What can molecular genetics contribute to marine biogeography? An urchin's tale. Journal of Experimental Marine Biology and Ecology, 203(1), 75-92. Rambaut, A., & Drummond, A. J. (2012). Tracer v1. 4. 2007. Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X., & Rozas, R. (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19(18), 2496-2497. Salzburger, W., Brandstätter, A., Gilles, A., Parson, W., Hempel, M., Sturmbauer, C., & Meyer, A. (2003). Phylogeography of the vairone (Leuciscus souffia, Risso 1826) in Central Europe. Molecular Ecology, 12(9), 2371-2386. Schubart, C. D., Diesel, R., & Hedges, S. B. (1998). Rapid evolution to terrestrial life in Jamaican crabs. Nature, 393(6683), 363. Shih, H.-T. (2017). A new species of land-locked freshwater shrimp of the genus Neocaridina (Decapoda: Caridea: Atyidae) from Iki Island, Kyushu, Japan. Shih, H.-T., & Cai, Y. (2007). Two new species of the land-locked freshwater shrimps genus, Neocaridina Kubo, 1938 (Decapoda: Caridea: Atyidae), from Taiwan, with notes on speciation on the island. ZOOLOGICAL STUDIES-TAIPEI-, 46(6), 680. Shokita, S. (1977). Abbreviated metamorphosis of land-locked fresh-water prawn, Macrobrachium asperulum (Von Martens) from Taiwan. Annotationes zoologicae Japonenses, 50(2), 110-122. Shy, J. Y. and H. P. Yu. 1991. Morphological observation on the development of Exopalaemon modestus (Heller, 1862)(Crustacea: Decapoda: Palamonidae) reared in the laboratory. Ann. J. Taiwans Mus., 34: 71-82. Simonsen, K. L., Churchill, G. A., & Aquadro, C. F. (1995). Properties of statistical tests of neutrality for DNA polymorphism data. Genetics, 141(1), 413-429. Slatkin, M. (1985). Gene flow in natural populations. Annual review of ecology and systematics, 393-430. Slatkin, M., & Hudson, R. R. (1991). Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129(2), 555-562. Snovsky, G., & Galil, B. S. (2011). The Australian redclaw crayfish Cherax quadricarinatus (von Martens, 1868)(Crustacea: Decapoda: Parastactidae) in the Sea of Galilee, Israel. Aquatic Invasions, 6(Suppl 1), S29-S31. Song, J., Hou, F., Zhang, X., Yue, B., & Song, Z. (2014). Mitochondrial genetic diversity and population structure of a vulnerable freshwater fish, rock carp (Procypris rabaudi) in upper Yangtze River drainage. Biochemical Systematics and Ecology, 55, 1-9. Sperisen, C., Büchler, U., Gugerli, F., Mátyás, G., Geburek, T., & Vendramin, G. (2001). Tandem repeats in plant mitochondrial genomes: application to the analysis of population differentiation in the conifer Norway spruce. Molecular Ecology, 10(1), 257-263. Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123(3), 585-595. Templeton, A. R., Crandall, K. A., & Sing, C. F. (1992). A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132(2), 619-633. Titus, B. M., & Daly, M. (2015). Fine‐scale phylogeography reveals cryptic biodiversity in Pederson's cleaner shrimp, Ancylomenes pedersoni (Crustacea: Caridea: Palaemonidae), along the Florida Reef Tract. Marine ecology, 36(4), 1379-1390. Toyota, K., & Seki, S. (2014). Freshwater Shrimp and Crab in Japan. Seibundo Shinkosha, Tokyo, Japan. Von Siebold, P. F., Schlegel, H., Temminck, C. J., & de Haan, W. (1833). Fauna japonica sive descriptio animalium: quae in itinere per Japoniam, jussu et auspiciis superiorum, qui summum in India Batava imperium tenent, suscepto, annis 1823-1830 collegit, notis, observationibus et adumbrationibus: Apud Arnz et Socios. Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol, 3(5), 294-299. Woolschot, L., Hughes, J. M., & Bunn, S. E. (1999). Dispersal among populations of Caridina sp.(Decapoda: Atyidae) in coastal lowland streams, south-eastern Queensland, Australia. Marine and Freshwater Research, 50(7), 681-688. Wright, S. (1949). The genetical structure of populations. Annals of eugenics, 15(1), 323-354. Zhang, D.-X., & Hewitt, G. M. (1996). Nuclear integrations: challenges for mitochondrial DNA markers. Trends in ecology & evolution, 11(6), 247-251.
|