|
1.Wilkins, M. R.; Williams, K. L.; Appel, R. D.; Hochstrasser, D. F., Proteome Research: New Frontiers in Functional Genomics. Springer-Verlag Berlin Heidelberg 1997. 2.Protein Phosphorylation. Kinexus. 3.Eymann, C.; Becher, D.; Bernhardt, J.; Gronau, K.; Klutzny, A.; Hecker, M., Dynamics of protein phosphorylation on Ser/Thr/Tyr in Bacillus subtilis. Proteomics 2007, 7 (19), 3509-3526. 4.Arrigo, A. P.; Michel, M. R., Decreased heat- and tumor necrosis factor-mediated hsp28 phosphorylation in thermotolerant HeLa cells. FEBS Lett 1991, 282 (1), 152-156. 5.Aponte, A. M.; Phillips, D.; Harris, R. A.; Blinova, K.; French, S.; Johnson, D. T.; Balaban, R. S., 32P labeling of protein phosphorylation and metabolite association in the mitochondria matrix. Methods Enzymol 2009, 457, 63-80. 6.Sarkar, P. K.; Morris, J. J.; Martin, J. V., Non-genomic effect of L-triiodothyronine on calmodulin-dependent synaptosomal protein phosphorylation in adult rat cerebral cortex. Indian J Exp Biol 2011, 49 (3), 169-176. 7.El-Benna, J.; Dang, P. M., Analysis of protein phosphorylation in human neutrophils. Methods Mol Biol 2007, 412, 85-96. 8.Weber, K.; Osborn, M., The reliability of molecular weight determinations by dodecyl sulfate-polyacrylamide gel electrophoresis. J Biol Chem 1969, 244 (16), 4406-4412. 9.O'Farrell, P. H., High resolution two-dimensional electrophoresis of proteins. J Biol Chem 1975, 250 (10), 4007-4021. 10.Klose, J., Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals. Humangenetik 1975, 26 (3), 231-243. 11.Alwine, J. C.; Kemp, D. J.; Stark, G. R., Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes. Proc Natl Acad Sci U S A 1977, 74 (12), 5350-5354. 12.Burnette, W. N., "Western blotting": electrophoretic transfer of proteins from sodium dodecyl sulfate--polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein A. Anal Biochem 1981, 112 (2), 195-203. 13.Towbin, H.; Staehelin, T.; Gordon, J., Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci U S A 1979, 76 (9), 4350-4354. 14.Fenn, J. B.; Mann, M.; Meng, C. K.; Wong, S. F.; Whitehouse, C. M., Electrospray ionization for mass spectrometry of large biomolecules. Science 1989, 246 (4926), 64-71. 15.Hillenkamp, F.; Karas, M.; Beavis, R. C.; Chait, B. T., Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers. Anal Chem 1991, 63 (24), 1193A-1203A. 16.Osterberg, R., Metal and hydrogen-ion binding properties of o-phosphoserine. Nature 1957, 179 (4557), 476-7. 17.Porath, J.; Carlsson, J.; Olsson, I.; Belfrage, G., Metal chelate affinity chromatography, a new approach to protein fractionation. Nature 1975, 258 (5536), 598-599. 18.Andersson, L.; Porath, J., Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography. Anal Biochem 1986, 154 (1), 250-254. 19.Michel, H. P.; Bennett, J., Identification of the phosphorylation site of an 8.3 kDa protein from photosystem II of spinach. FEBS Letters 1987, 212 (1), 103-108. 20.Chaga, G. S., Twenty-five years of immobilized metal ion affinity chromatography: past, present and future. J Biochem Biophys Methods 2001, 49 (1-3), 313-334. 21.Suen, S. Y.; Liu, Y. C.; Chang, C. S., Exploiting immobilized metal affinity membranes for the isolation or purification of therapeutically relevant species. J Chromatogr B Analyt Technol Biomed Life Sci 2003, 797 (1-2), 305-319. 22.Arnold, F. H., Metal-affinity separations: a new dimension in protein processing. Biotechnology (N Y) 1991, 9 (2), 151-156. 23.Ficarro, S. B.; McCleland, M. L.; Stukenberg, P. T.; Burke, D. J.; Ross, M. M.; Shabanowitz, J.; Hunt, D. F.; White, F. M., Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat Biotechnol 2002, 20 (3), 301-305. 24.Wolschin, F.; Wienkoop, S.; Weckwerth, W., Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC). Proteomics 2005, 5 (17), 4389-4397. 25.Wolschin, F.; Weckwerth, W., Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites. Plant Methods 2005, 1 (1), 9. 26.Larsen, M. R.; Thingholm, T. E.; Jensen, O. N.; Roepstorff, P.; Jorgensen, T. J., Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns. Mol Cell Proteomics 2005, 4 (7), 873-886. 27.Pearson, R. G., Hard and Soft Acids and Bases. Journal of the American Chemical Society 1963, 85 (22), 3533-3539. 28.Chen, Y.-F.; Lee, C.-Y.; Yeng, M.-Y.; Chiu, H.-T., The effect of calcination temperature on the crystallinity of TiO2 nanopowders. Journal of Crystal Growth 2003, 247 (3), 363-370. 29.Agarwal, S.; Mojet, B.; Lefferts, L.; Datye, A., Ceria Nanoshapes-Structural and Catalytic Properties. Catalysis by Materials with Well-Defined Structures 2015, 31-70. 30.Manto, M. J.; Xie, P. F.; Wang, C., Catalytic Dephosphorylation Using Ceria Nanocrystals. Acs Catalysis 2017, 7 (3), 1931-1938. 31.Tan, Z. C.; Wu, T. S.; Soo, Y. L.; Peng, Y. K., Unravelling the true active site for CeO2-catalyzed dephosphorylation. Applied Catalysis B-Environmental 2020, 264. 32.Younis, A.; Chu, D.; Li, S., Cerium oxide nanostructures and their applications. 2016. 33.Malavasi, L.; Fisher, C. A.; Islam, M. S., Oxide-ion and proton conducting electrolyte materials for clean energy applications: structural and mechanistic features. Chem Soc Rev 2010, 39 (11), 4370-4387. 34.Bumajdad, A.; Eastoe, J.; Mathew, A., Cerium oxide nanoparticles prepared in self-assembled systems. Adv Colloid Interface Sci 2009, 147-148, 56-66. 35.Patil, S.; Sandberg, A.; Heckert, E.; Self, W.; Seal, S., Protein adsorption and cellular uptake of cerium oxide nanoparticles as a function of zeta potential. Biomaterials 2007, 28 (31), 4600-4607. 36.Yang, G.; Park, S. J., Conventional and Microwave Hydrothermal Synthesis and Application of Functional Materials: A Review. Materials (Basel) 2019, 12 (7). 37.Nahar, L.; Arachchige, I. U., Sol-Gel methods for the assembly of metal and semiconductor nanoparticles. JSM Nanotechnol Nanomedicne 2013, 1, 1004. 38.Egger, L.; Menard, O.; Baumann, C.; Duerr, D.; Schlegel, P.; Stoll, P.; Vergeres, G.; Dupont, D.; Portmann, R., Digestion of milk proteins: Comparing static and dynamic in vitro digestion systems with in vivo data. Food Research International 2019, 118, 32-39.Crane, C. W.; Neuberger, A., The digestion and absorption of protein by normal man. Biochem J 1960, 74, 313-23. 40.Merrifield, R. B., Solid Phase Peptide Synthesis. I. The Synthesis of a Tetrapeptide. Journal of the American Chemical Society 1963, 85 (14), 2149-2154. 41.Pedersen, S. L.; Tofteng, A. P.; Malik, L.; Jensen, K. J., Microwave heating in solid-phase peptide synthesis. Chemical Society Reviews 2012, 41 (5), 1826-1844. 42.Sharma, I.; Crich, D., Direct Fmoc-Chemistry-Based Solid-Phase Synthesis of Peptidyl Thioesters. Journal of Organic Chemistry 2011, 76 (16), 6518-6524. 43.Luna, O. F.; Gomez, J.; Cardenas, C.; Albericio, F.; Marshall, S. H.; Guzman, F., Deprotection Reagents in Fmoc Solid Phase Peptide Synthesis: Moving Away from Piperidine? Molecules 2016, 21 (11). 44.Ralhan, K.; KrishnaKumar, V. G.; Gupta, S., Piperazine and DBU: a safer alternative for rapid and efficient Fmoc deprotection in solid phase peptide synthesis. Rsc Advances 2015, 5 (126), 104417-104425. 45.Wade, J. D.; Mathieu, M. N.; Macris, M.; Tregear, G. W., Base-induced side reactions in Fmoc-solid phase peptide synthesis: Minimization by use of piperazine as N-alpha-deprotection reagent. Letters in Peptide Science 2000, 7 (2), 107-112. 46.Sun, S.; Ma, H.; Han, G.; Wu, R.; Zou, H.; Liu, Y., Efficient enrichment and identification of phosphopeptides by cerium oxide using on-plate matrix-assisted laser desorption/ionization time-of-flight mass spectrometric analysis. Rapid Commun Mass Spectrom 2011, 25 (13), 1862-1868. 47.Huan, W.; Xing, M.; Cheng, C.; Li, J., Facile Fabrication of Magnetic Metal–Organic Framework Nanofibers for Specific Capture of Phosphorylated Peptides. ACS Sustainable Chemistry & Engineering 2019, 7 (2), 2245-2254. 48.Sun, M. X.; Li, Z. J.; Li, H.; Wu, Z. L.; Shen, W. Z.; Fu, Y. Q., Mesoporous Zr-doped CeO2 nanostructures as superior supercapacitor electrode with significantly enhanced specific capacity and excellent cycling stability. Electrochimica Acta 2020, 331. 49.Ma, C. Y.; Tang, F.; Chen, J. D.; Ma, R.; Yuan, X. Y.; Wen, Z. C.; Long, J. Q.; Li, J. T.; Du, M. M.; Zhang, J. T.; Cao, Y. G., Spectral, energy resolution properties and green-yellow LEDs applications of transparent Ce3+:Lu3Al5O12 ceramics. Journal of the European Ceramic Society 2016, 36 (16), 4205-4213. 50.Saalinraj, S.; Ajithprasad, K. C., Effect of Calcination Temperature on Non-linear Absorption Co-efficient of Nano Sized Titanium Dioxide (TiO2) Synthesised by Sol-Gel Method. Materials Today: Proceedings 2017, 4 (2, Part C), 4372-4379. 51.Stadie, N. P.; Callini, E.; Mauron, P.; Borgschulte, A.; Zuttel, A., Supercritical nitrogen processing for the purification of reactive porous materials. J Vis Exp 2015, (99), e52817. 52.Hsu, J. L.; Chen, S. H., Stable isotope dimethyl labelling for quantitative proteomics and beyond. Philos Trans A Math Phys Eng Sci 2016, 374 (2079). 53.Boersema, P. J.; Raijmakers, R.; Lemeer, S.; Mohammed, S.; Heck, A. J., Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat Protoc 2009, 4 (4), 484-94. 54.Su, J.; He, X. W.; Chen, L. X.; Zhang, Y. K., Adenosine Phosphate Functionalized Magnetic Mesoporous Graphene Oxide Nanocomposite for Highly Selective Enrichment of Phosphopeptides. ACS Sustainable Chemistry & Engineering 2018, 6 (2), 2188-2196. 55.Chen, Y. J.; Xiong, Z. C.; Peng, L.; Gan, Y. Y.; Zhao, Y. M.; Shen, J.; Qian, J. H.; Zhang, L. Y.; Zhang, W. B., Facile Preparation of Core–Shell Magnetic Metal–Organic Framework Nanoparticles for the Selective Capture of Phosphopeptides. ACS Applied Materials & Interfaces 2015, 7 (30), 16338-16347. 56.Yan, Y. H.; Zheng, Z. F.; Deng, C. H.; Zhang, X. M.; Yang, P. Y., Facile synthesis of Ti4+-immobilized Fe3O4@polydopamine core-shell microspheres for highly selective enrichment of phosphopeptides. Chem Commun (Camb) 2013, 49 (44), 5055-5057. 57.Zhang, Y.; Li, L.; Ma, W.; Zhang, Y.; Yu, M.; Guo, J.; Lu, H.; Wang, C., Two-in-one strategy for effective enrichment of phosphopeptides using magnetic mesoporous gamma-Fe2O3 nanocrystal clusters. ACS Appl Mater Interfaces 2013, 5 (3), 614-621. 58.Li, L. P.; Liu, J. Z.; Xu, L. N.; Li, Z.; Bai, Y.; Xiao, Y. L.; Liu, H. W., GdF3 as a promising phosphopeptide affinity probe and dephospho-labelling medium: experiments and theoretical explanation. Chem Commun (Camb) 2014, 50 (78), 11572-11575. 59.Yan, Y.; Sun, X.; Deng, C.; Li, Y.; Zhang, X., Metal oxide affinity chromatography platform-polydopamine coupled functional two-dimensional titania graphene nanohybrid for phosphoproteome research. Anal Chem 2014, 86 (9), 4327-4332. 60.Sun, X. N.; Liu, X. D.; Feng, J. N.; Li, Y.; Deng, C. H.; Duan, G. L., Hydrophilic Nb5+-immobilized magnetic core–shell microsphere – A novel immobilized metal ion affinity chromatography material for highly selective enrichment of phosphopeptides. Anal. Chim. Acta 2015, 880, 67-76. 61.Luo, B.; Yang, M. G.; Jiang, P. P.; Lan, F.; Wu, Y., Multi-affinity sites of magnetic guanidyl-functionalized metal-organic framework nanospheres for efficient enrichment of global phosphopeptides. Nanoscale 2018, 10 (18), 8391-8396. 62.Zheng, H. J.; Jia, J. X.; Li, Z.; Jia, Q., Bifunctional Magnetic Supramolecular-Organic Framework: A Nanoprobe for Simultaneous Enrichment of Glycosylated and Phosphorylated Peptides. Analytical Chemistry 2020, 92 (3), 2680-2689. 63.Li, J. Y.; Cao, Z. M.; Hua, Y.; Wei, G.; Yu, X. Z.; Shang, W. B.; Lian, H. Z., Solvothermal Synthesis of Novel Magnetic Nickel Based Iron Oxide Nanocomposites for Selective Capture of Global- and Mono-Phosphopeptides. Analytical Chemistry 2020, 92 (1), 1058-1067. 64.Zhang, H. Y.; Li, X. W.; Ma, S. J.; Ou, J. J.; Wei, Y. M.; Ye, M. L., One-step preparation of phosphate-rich carbonaceous spheres via a hydrothermal approach for phosphopeptide analysis. Green Chemistry 2019, 21 (8), 2052-2060.
|