|
Agostinelli, C., and U. Lund. 2017. R package 'circular': Circular Statistics (version 0.4-93). Aquilino, F., A. Paradiso, R. Trani, C. Longo, C. Pierri, G. Corriero, and M. C. de Pinto. 2020. Chaetomorpha linum in the bioremediation of aquaculture wastewater: Optimization of nutrient removal efficiency at the laboratory scale. Aquaculture 523:735133. Asner, G. P., N. R. Vaughn, R. E. Martin, S. A. Foo, J. Heckler, B. J. Neilson, and J. M. Gove. 2022. Mapped coral mortality and refugia in an archipelago-scale marine heat wave. Proceedings of the National Academy of Sciences 119:e2123331119. Bartlett, T. C. 2013. Small Scale Experimental Systems for Coral Research: Considerations, Planning, and Recommendations. NOAA Technical Memorandum NOS NCCOS 165 and CRCP 18:68. Bates, D., M. M., B. B., and S. W. 2015. Fitting Linear Mixed-Effects Models Using lme4. Journal of Statistical Software 67(1), 1-48. Bellworthy, J., J. E. Spangenberg, and M. Fine. 2019. Feeding increases the number of offspring but decreases parental investment of Red Sea coral Stylophora pistillata. Ecology and Evolution 9:12245-12258. Boström-Einarsson, L., R. C. Babcock, E. Bayraktarov, D. Ceccarelli, N. Cook, S. C. A. Ferse, B. Hancock, P. Harrison, M. Hein, E. Shaver, A. Smith, D. Suggett, P. J. Stewart-Sinclair, T. Vardi, and I. M. McLeod. 2020. Coral restoration – A systematic review of current methods, successes, failures and future directions. PLOS ONE 15:e0226631. Chang, T.-C., A. B. Mayfield, and T.-Y. Fan. 2020. Culture systems influence the physiological performance of the soft coral Sarcophyton glaucum. Scientific Reports 10:20200. Chou, L. M., B. P. L. Goh, and S. T. Quek. 2019. Planulation in the Scleractinian Coral Pocillopora damicornis in Singapore Waters. International Journal of Environmental Science and Development 10, no.10. Conlan, J. A., L. K. Bay, A. Severati, C. Humphrey, and D. S. Francis. 2018. Comparing the capacity of five different dietary treatments to optimise growth and nutritional composition in two scleractinian corals. PLOS ONE 13:e0207956. Conlan, J. A., C. A. Humphrey, A. Severati, and D. S. Francis. 2017. Influence of different feeding regimes on the survival, growth, and biochemical composition of Acropora coral recruits. PLOS ONE 12:e0188568. Costa, A. P. L., R. Calado, B. Marques, A. I. Lillebø, J. Serôdio, A. M. V. M. Soares, E. A. Serrão, and R. J. M. Rocha. 2016. The effect of mixotrophy in the ex situ culture of the soft coral Sarcophyton cf. glaucum. Aquaculture 452:151-159. Craggs, J., J. R. Guest, M. Davis, J. Simmons, E. Dashti, and M. Sweet. 2017. Inducing broadcast coral spawning ex situ: Closed system mesocosm design and husbandry protocol. Ecology and Evolution 7:11066-11078. Crowder, C. M., W.-L. Liang, V. M. Weis, and T.-Y. Fan. 2014. Elevated Temperature Alters the Lunar Timing of Planulation in the Brooding Coral Pocillopora damicornis. PLOS ONE 9:e107906. DeFilippo, L. B., L. C. McManus, D. E. Schindler, M. L. Pinsky, M. A. Colton, H. E. Fox, E. W. Tekwa, S. R. Palumbi, T. E. Essington, and M. M. Webster. 2022. Assessing the potential for demographic restoration and assisted evolution to build climate resilience in coral reefs. Ecological Applications n/a:e2650. Dixson, D. L., D. Abrego, and M. E. Hay. 2014. Chemically mediated behavior of recruiting corals and fishes: A tipping point that may limit reef recovery. Science 345:892-897. Dubinsky, Z., and N. Stambler. 1996. Marine pollution and coral reefs. Global Change Biology 2:511-526. Edmunds, P. J. 2022. Finding signals in the noise of coral recruitment. Coral Reefs 41:81-93. El-Sayed, A. A. M., K. A. Eldamhougy, A. M. Hellal, M. S. A. Salem, A. M. Nasef, and S. S. Salem. 2014. Reproductive Biology of the Guard Coral Crab , Trapezia Cymodoce ( Family Trapeziidae ) from Abu Galloum Protected Area , Gulf of Aqaba , South Sinai , Egypt. Egyptian Journal of Aquatic Biology and Fisheries 18:89-102. Fan, T. Y., Y. C. Hsieh, K. H. Lin, F. W. Kuo, K. Soong, C. J. McRae, P. J. Edmunds, and L. S. Fang. 2017. Plasticity in lunar timing of larval release of two brooding pocilloporid corals in an internal tide‑induced upwelling reef. Marine Ecology Progress Series 569:117-127. Fan, T. Y., K. H. Lin, F. W. Kuo, K. Soong, L. L. Liu, and L. S. Fang. 2006. Diel patterns of larval release by five brooding scleractinian corals. Marine Ecology Progress Series 321:133-142. Ferrier-Pagès, C., V. Schoelzke, J. Jaubert, L. Muscatine, and O. Hoegh-Guldberg. 2001. Response of a scleractinian coral, Stylophora pistillata, to iron and nitrate enrichment. Journal of Experimental Marine Biology and Ecology 259:249-261. Fitt, W. K., F. K. McFarland, M. E. Warner, and G. C. Chilcoat. 2000. Seasonal patterns of tissue biomass and densities of symbiotic dinoflagellates in reef corals and relation to coral bleaching. Limnology and Oceanography 45:677-685. Forsman, Z. H., B. K. Kimokeo, C. E. Bird, C. L. Hunter, and R. J. Toonen. 2012. Coral farming: effects of light, water motion and artificial foods. Journal of the Marine Biological Association of the United Kingdom 92:721-729. Goergen, E. A., S. Schopmeyer, A. L. Moulding, A. Moura, P. Kramer, and T. S. Viehman. 2020. Coral reef restoration monitoring guide: Methods to evaluate restoration success from local to ecosystem scales. Grottoli, A. G., L. J. Rodrigues, and C. Juarez. 2004. Lipids and stable carbon isotopes in two species of Hawaiian corals, Porites compressa and Montipora verrucosa, following a bleaching event. Marine Biology 145:621-631. Grottoli, A. G., L. J. Rodrigues, and J. E. Palardy. 2006. Heterotrophic plasticity and resilience in bleached corals. Nature 440:1186-1189. Harriott, V. J. 1983. Reproductive seasonality, settlement, and post-settlement mortality of Pocillopora damicornis (Linnaeus), at Lizard Island, Great Barrier Reef. Coral Reefs 2:151-157. Harrison, P. L. 2011. Sexual Reproduction of Scleractinian Corals. Pages 59-85 in Z. Dubinsky and N. Stambler, editors. Coral Reefs: An Ecosystem in Transition. Springer Netherlands, Dordrecht. Heron, S. F., J. A. Maynard, R. van Hooidonk, and C. M. Eakin. 2016. Warming Trends and Bleaching Stress of the World's Coral Reefs 1985-2012. Sci Rep 6:38402. Hoffmann, A. A., and M. J. Hercus. 2000. Environmental Stress as an Evolutionary Force. BioScience 50:217-226. Howlett, L., E. F. Camp, J. Edmondson, N. Henderson, and D. J. Suggett. 2021. Coral growth, survivorship and return-on-effort within nurseries at high-value sites on the Great Barrier Reef. PLOS ONE 16:e0244961. Huang, Y.-L., A. B. Mayfield, and T.-Y. Fan. 2020. Effects of feeding on the physiological performance of the stony coral Pocillopora acuta. Scientific Reports 10:19988. Hughes, T. P., K. D. Anderson, S. R. Connolly, S. F. Heron, J. T. Kerry, J. M. Lough, A. H. Baird, J. K. Baum, M. L. Berumen, T. C. Bridge, D. C. Claar, C. M. Eakin, J. P. Gilmour, N. A. J. Graham, H. Harrison, J.-P. A. Hobbs, A. S. Hoey, M. Hoogenboom, R. J. Lowe, M. T. McCulloch, J. M. Pandolfi, M. Pratchett, V. Schoepf, G. Torda, and S. K. Wilson. 2018. Spatial and temporal patterns of mass bleaching of corals in the Anthropocene. Science 359:80-83. Jokiel, P. L., R. Y. Ito, and P. M. Liu. 1985. Night irradiance and synchronization of lunar release of planula larvae in the reef coral Pocillopora damicornis. Marine Biology 88:167-174. Kassambara, A. 2020. ggpubr: 'ggplot2' Based Publication Ready Plots. R package version 0.4.0. Keshavmurthy, S., C. M. Hsu, C. Y. Kuo, P. J. Meng, J. T. Wang, and C. A. Chen. 2012. Symbiont communities and host genetic structure of the brain coral Platygyra verweyi, at the outlet of a nuclear power plant and adjacent areas. Mol Ecol 21:4393-4407. Kim, C. J. S., C. Roelfsema, S. Dove, and O. Hoegh-Guldberg. 2022. The condition of four coral reefs in Timor-Leste before and after the 2016 - 2017 marine heatwave. Oceans 3:147-171. Lenth, R. 2021. emmeans: Estimated Marginal Means, aka Least-Squares Means. R package version 1.6.1. Levinton, J., M. Doall, D. Ralston, A. Starke, and B. Allam. 2011. Climate Change, Precipitation and Impacts on an Estuarine Refuge from Disease. PLOS ONE 6:e18849. Lewis, J. B., and W. S. Price. 1975. Feeding mechanisms and feeding strategies of Atlantic reef corals. Journal of Zoology 176:527-544. Lin, C.-H., S. Takahashi, A. J. Mulla, and Y. Nozawa. 2021. Moonrise timing is key for synchronized spawning in coral Dipsastraea speciosa. Proceedings of the National Academy of Sciences 118:e2101985118. Mahboobeh, T., A. Hossein, A. M. Marcia, and R. L. Stephen. 2015. Nitrate and Nitrite Removal from Wastewater using Algae. Current Biotechnology 4:426-440. Mayfield, A. B., M.-N. Chen, P.-J. Meng, H.-J. Lin, C.-S. Chen, and P.-J. Liu. 2013a. The physiological response of the reef coral Pocillopora damicornis to elevated temperature: results from coral reef mesocosm experiments in Southern Taiwan. Marine Environmental Research 86:1-11. Mayfield, A. B., T. Y. Fan, and C. S. Chen. 2013b. Physiological acclimation to elevated temperature in a reef-building coral from an upwelling environment. Coral Reefs 32:909-921. McRae, C. J., W.-B. Huang, T.-Y. Fan, and I. M. Côté. 2021. Effects of thermal conditioning on the performance of Pocillopora acuta adult coral colonies and their offspring. Coral Reefs 40:1491-1503. Miller, K. J., and D. J. Ayre. 2004. The role of sexual and asexual reproduction in structuring high latitude populations of the reef coral Pocillopora damicornis. Heredity 92:557-568. Nietzer, S., M. Moeller, M. Kitamura, and P. J. Schupp. 2018. Coral Larvae Every Day: Leptastrea purpurea, a Brooding Species That Could Accelerate Coral Research. Frontiers in Marine Science 5. Nozawa, Y., C.-H. Lin, and P.-J. Meng. 2020. Sea urchins (diadematids) promote coral recovery via recruitment on Taiwanese reefs. Coral Reefs 39:1199-1207. O’Neil, K. L., R. M. Serafin, J. T. Patterson, and J. R. K. Craggs. 2021. Repeated ex situ Spawning in Two Highly Disease Susceptible Corals in the Family Meandrinidae. Frontiers in Marine Science 8. Oh, G.-W., S.-C. Ko, D. H. Lee, S.-J. Heo, and W.-K. Jung. 2017. Biological activities and biomedical potential of sea cucumber (Stichopus japonicus): a review. Fisheries and Aquatic Sciences 20:28. Petersen, D., M. Laterveer, D. Van Bergen, M. Hatta, R. Hebbinghaus, M. Janse, R. Jones, U. Richter, T. Ziegler, G. Visser, and H. Schuhmacher. 2006. The application of sexual coral recruits for the sustainable management of ex situ populations in public aquariums to promote coral reef conservation — SECORE Project. Aquatic Conservation: Marine and Freshwater Ecosystems 16:167-179. Petersen, D., A. Wietheger, and M. Laterveer. 2008. Influence of different food sources on the initial development of sexual recruits of reefbuilding corals in aquaculture. Aquaculture 277:174-178. R Core Team. 2019. R: A language and environment for statistical computing. R Foundation for Statistical Computing. Richmond, R., and P. Jokiel. 1984. Lunar Periodicity in Larva Release in the Reef Coral Pocillopora Damicornis at Enewetak and Hawaii. Bulletin of Marine Science 34:280-287. Rinkevich, B., and Y. Loya. 1987. Variability in the Pattern of Sexual Reproduction of the Coral Stylophora pistillata at Eilat, Red Sea: A Long-Term Study. Biological Bulletin 173:335-344. Samsuri, A. N., Y. P. Kikuzawa, D. Taira, S. Q. Sam, W. T. Sim, C. S. L. Ng, L. Afiq-Rosli, T. W. D. Wee, N. K. Ng, T. C. Toh, and L. M. Chou. 2018. The effectiveness of Trapezia cymodoce in defending its host coral Pocillopora acuta against corallivorous Drupella. Marine Biology 165:70. Séré, M. G., L. M. Massé, R. Perissinotto, and M. H. Schleyer. 2010. Influence of heterotrophic feeding on the sexual reproduction of Pocillopora verrucosa in aquaria. Journal of Experimental Marine Biology and Ecology 395:63-71. Shefy, D., N. Shashar, and B. Rinkevich. 2018. The reproduction of the Red Sea coral Stylophora pistillata from Eilat: 4-decade perspective. Marine Biology 165:27. Shlesinger, T., and Y. Loya. 2019. Sexual Reproduction of Scleractinian Corals in Mesophotic Coral Ecosystems vs. Shallow Reefs. Pages 653-666 in Y. Loya, K. A. Puglise, and T. C. L. Bridge, editors. Mesophotic Coral Ecosystems. Springer International Publishing, Cham. Smith, H. A., A. Moya, N. E. Cantin, M. J. H. van Oppen, and G. Torda. 2019a. Observations of Simultaneous Sperm Release and Larval Planulation Suggest Reproductive Assurance in the Coral Pocillopora acuta. Frontiers in Marine Science 6. Smith, H. A., A. Moya, N. E. Cantin, M. J. H. van Oppen, and G. Torda. 2019b. Observations of Simultaneous Sperm Release and Larval Planulation Suggest Reproductive Assurance in the Coral Pocillopora acuta. Frontiers in Marine Science 6. Tagliafico, A., S. Rangel, B. Kelaher, and L. Christidis. 2018. Optimizing heterotrophic feeding rates of three commercially important scleractinian corals. Aquaculture 483:96-101. Tagliafico, A., D. Rudd, M. S. Rangel, B. P. Kelaher, L. Christidis, K. Cowden, S. R. Scheffers, and K. Benkendorff. 2017. Lipid-enriched diets reduce the impacts of thermal stress in corals. Marine Ecology Progress Series 573:129-141. Tanner, J. E. 1996. Seasonality and lunar periodicity in the reproduction of Pocilloporid corals. Coral Reefs 15:59-66. Thornhill, D. J., R. D. Rotjan, B. D. Todd, G. C. Chilcoat, R. Iglesias-Prieto, D. W. Kemp, T. C. LaJeunesse, J. M. Reynolds, G. W. Schmidt, T. Shannon, M. E. Warner, and W. K. Fitt. 2011. A Connection between Colony Biomass and Death in Caribbean Reef-Building Corals. PLOS ONE 6:e29535. Torres, A. F., Z. H. Forsman, and R. Ravago-Gotanco. 2020. Shifts in coral clonality along a gradient of disturbance: insights on reproduction and dispersal of Pocillopora acuta. Marine Biology 167:161. Villanueva, R. D., H. T. Yap, and M. N. E. Montaño. 2008. Timing of planulation by pocilloporid corals in the northwestern Philippines. Marine Ecology Progress Series 370:111-119. Wang, J., Y. Guan, L. Wu, X. Guan, W. Cai, J. Huang, W. Dong, and B. Zhang. 2021. Changing Lengths of the Four Seasons by Global Warming. Geophysical Research Letters 48:e2020GL091753. Weber, M., D. d. Beer, C. Lott, L. Polerecky, K. Kohls, R. M. M. Abed, T. G. Ferdelman, and K. E. Fabricius. 2012. Mechanisms of damage to corals exposed to sedimentation. Proceedings of the National Academy of Sciences 109:E1558-E1567. Westoby, R., S. Becken, and A. P. Laria. 2020. Perspectives on the human dimensions of coral restoration. Regional Environmental Change 20:109. Wickham, H. 2016. ggplot2: Elegant Graphics for Data Analysis. Yeoh, S.-R., and C.-F. Dai. 2010. The production of sexual and asexual larvae within single broods of the scleractinian coral, Pocillopora damicornis. Marine Biology 157:351-359. Yuen, Y. S., S. S. Yamazaki, T. Nakamura, G. Tokuda, and H. Yamasaki. 2009. Effects of live rock on the reef-building coral Acropora digitifera cultured with high levels of nitrogenous compounds. Aquacultural Engineering 41:35-43. Zakai, D., O. Levy, and N. E. Chadwick-Furman. 2000. Experimental fragmentation reduces sexual reproductive output by the reef-building coral Pocillopora damicornis. Coral Reefs 19:185-188. Zoccola, D., N. Ounais, D. Barthelemy, R. Calcagno, F. Gaill, S. Henard, O. Hoegh-Guldberg, M. Janse, J. Jaubert, H. Putnam, B. Salvat, C. R. Voolstra, and D. Allemand. 2020. The World Coral Conservatory (WCC): A Noah's ark for corals to support survival of reef ecosystems. PLOS Biology 18:e3000823
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